| Rank | Song | Count | Graph |
|---|
| 1 | Black Magic Woman | 14 |  |
| 2 | Oye Como Va | 12 | |
| 3 | Evil Ways | 11 | |
| 4 | Europa (Earth's Cry Heaven's Smile) | 10 | |
| 5 | Samba Pa Ti | 10 | |
| 6 | Interplanetary Party | 9 | |
| 7 | No One To Depend On | 9 | |
| 8 | She's Not There | 9 | |
| 9 | Da Tu Amor | 6 | |
| 10 | El Fuego | 6 | |
| 11 | Hermes | 6 | |
| 12 | (Da Le) Yaleo | 4 | |
| 13 | Adouma | 4 | |
| 14 | Africa Bamba | 4 | |
| 15 | All Aboard | 4 | |
| 16 | Anywhere You Want To Go | 4 | |
| 17 | Aye Aye Aye | 4 | |
| 18 | Blues Magic | 4 | |
| 19 | Caminando | 4 | |
| 20 | Choo Choo | 4 | |
| 21 | Come As You Are | 4 | |
| 22 | Echizo | 4 | |
| 23 | El Farol | 4 | |
| 24 | Fillmore East | 4 | |
| 25 | Foo Foo | 4 | |
| 26 | Forgiveness | 4 | |
| 27 | Freedom In Your Mind (feat. Ronald Isley) | 4 | |
| 28 | Leave Me Alone | 4 | |
| 29 | Love Makes the World Go Round (feat. Ronald Isley) | 4 | |
| 30 | Migra | 4 | |
| 31 | Primavera | 4 | |
| 32 | Shake It | 4 | |
| 33 | Suenos | 4 | |
| 34 | Victory Is Won | 4 | |
| 35 | Yambu | 4 | |
| 36 | You and I | 4 | |
| 37 | America For Sale (feat. Kirk Hammett & Mark Osegueda) | 3 | |
| 38 | Angel Choir / All Together (feat. Chick Corea & Gayle Moran Corea) | 3 | |
| 39 | Break (feat. Ally Brooke) | 3 | |
| 40 | Ghost of Future Pull / New Light | 3 | |
| 41 | Ghost Of Future Pull II | 3 | |
| 42 | Mother Yes | 3 | |
| 43 | Peace Power (feat. Corey Glover) | 3 | |
| 44 | Santana Celebration | 3 | |
| 45 | Song For Cindy | 3 | |
| 46 | Whiter Shade Of Pale (feat. Steve Winwood) | 3 | |
| 47 | Black Magic Woman/Gypsy Queen | 2 | |
| 48 | Africa Speaks | 1 | |
| 49 | Ah, Sweet Dancer | 1 | |
| 50 | Angelica Faith | 1 | |
| 51 | Batonga | 1 | |
| 52 | Bembele | 1 | |
| 53 | Blue Skies | 1 | |
| 54 | Breaking Down The Door | 1 | |
| 55 | Candombe Cumbele | 1 | |
| 56 | Canela | 1 | |
| 57 | Dance Sister Dance (Baila Mi Hermana) | 1 | |
| 58 | Dom | 1 | |
| 59 | El Nicoya | 1 | |
| 60 | Eres La Luz | 1 | |
| 61 | Gitano | 1 | |
| 62 | Gypsy Queen (Live)/Black Magic Woman | 1 | |
| 63 | Hope You're Feeling Better | 1 | |
| 64 | In The Light Of A New Day | 1 | |
| 65 | Incident At Neshabur | 1 | |
| 66 | Let It Shine | 1 | |
| 67 | Let Me | 1 | |
| 68 | Los Invisibles | 1 | |
| 69 | Luna Hechicera | 1 | |
| 70 | Macumba In Budapest | 1 | |
| 71 | Metatron | 1 | |
| 72 | Mother's Daughter | 1 | |
| 73 | Mr. Szabo | 1 | |
| 74 | Never The Same Again | 1 | |
| 75 | Nomad | 1 | |
| 76 | Oye Este Mi Canto | 1 | |
| 77 | Paraísos Quemados | 1 | |
| 78 | Se A Cabo | 1 | |
| 79 | Se A Cabo (Live) | 1 | |
| 80 | Shape Shifter | 1 | |
| 81 | Singing Winds, Crying Beasts | 1 | |
| 82 | Spark Of The Divine | 1 | |
| 83 | Take Me With You | 1 | |
| 84 | Tell Me Are You Tired | 1 | |
| 85 | Toussaint L'Overture (Live) | 1 | |
| 86 | Yo Me Lo Meresco | 1 | |